ugene-48.1-1.fc39 in Fedora 39
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Package Info (Data from x86_64 build)
🠗 Changelog
🠗 Dependencies
🠗 Provides
🠗 Files
Changelog
| Date | Author | Change |
|---|---|---|
| 2023-09-05 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 48.1-1 | - 48.1 |
| 2023-08-10 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 48.0-1 | - 48.0 |
| 2023-07-22 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 47.0-2 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild |
| 2023-05-23 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 47.0-1 | - 47.0 |
| 2023-02-24 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 46.0-1 | - 46.0 |
| 2023-01-21 | Fedora Release Engineering <releng at fedoraproject dot org> - 45.1-2.1 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild |
| 2023-01-18 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 45.1-2 | - Header file inclusion fix for gcc13 |
| 2023-01-01 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 45.1-1 | - A Happy New Year 45.1 release |
| 2022-12-20 | Florian Weimer <fweimer at redhat dot com> - 45.0-2 | - Apply upstream patch to fix C99 compatibility issue |
| 2022-11-20 | Mamoru TASAKA <mtasaka at fedoraproject dot org> - 45.0-1 | - 45.0 |
Dependencies
Provides
- application()
- application(ugene.desktop)
- bundled(samtools)
- libCoreTests.so()(64bit)
- libGUITestBase.so()(64bit)
- libQSpec.so()(64bit)
- libU2Algorithm.so()(64bit)
- libU2Core.so()(64bit)
- libU2Designer.so()(64bit)
- libU2Formats.so()(64bit)
- libU2Gui.so()(64bit)
- libU2Lang.so()(64bit)
- libU2Private.so()(64bit)
- libU2Script.so()(64bit)
- libU2Test.so()(64bit)
- libU2View.so()(64bit)
- libannotator.so()(64bit)
- libapi_tests.so()(64bit)
- libball.so()(64bit)
- libbiostruct3d_view.so()(64bit)
- libbreakpad.so()(64bit)
- libchroma_view.so()(64bit)
- libcircular_view.so()(64bit)
- libdbi_bam.so()(64bit)
- libdna_export.so()(64bit)
- libdna_flexibility.so()(64bit)
- libdna_graphpack.so()(64bit)
- libdna_stat.so()(64bit)
- libdotplot.so()(64bit)
- libenzymes.so()(64bit)
- libexternal_tool_support.so()(64bit)
- libgenecut.so()(64bit)
- libgenome_aligner.so()(64bit)
- libgor4.so()(64bit)
- libhmm2.so()(64bit)
- liblinkdata_support.so()(64bit)
- liborf_marker.so()(64bit)
- libpcr.so()(64bit)
- libperf_monitor.so()(64bit)
- libphylip.so()(64bit)
- libprimer3.so()(64bit)
- libptools.so()(64bit)
- libquery_designer.so()(64bit)
- libremote_blast.so()(64bit)
- librepeat_finder.so()(64bit)
- libsitecon.so()(64bit)
- libsmith_waterman.so()(64bit)
- libtest_runner.so()(64bit)
- libumuscle.so()(64bit)
- libvariants.so()(64bit)
- libweight_matrix.so()(64bit)
- libworkflow_designer.so()(64bit)
- mimehandler(application/x-ugene-abi)
- mimehandler(application/x-ugene-aln)
- mimehandler(application/x-ugene-db)
- mimehandler(application/x-ugene-embl)
- mimehandler(application/x-ugene-fa)
- mimehandler(application/x-ugene-fastq)
- mimehandler(application/x-ugene-gb)
- mimehandler(application/x-ugene-gff)
- mimehandler(application/x-ugene-hmm)
- mimehandler(application/x-ugene-mmdb)
- mimehandler(application/x-ugene-msf)
- mimehandler(application/x-ugene-newick)
- mimehandler(application/x-ugene-pdb)
- mimehandler(application/x-ugene-sam-bam)
- mimehandler(application/x-ugene-scf)
- mimehandler(application/x-ugene-srfa)
- mimehandler(application/x-ugene-sto)
- mimehandler(application/x-ugene-sw)
- mimehandler(application/x-ugene-uprj)
- mimehandler(application/x-ugene-uql)
- mimehandler(application/x-ugene-uwl)
- ugene
- ugene(x86-64)
Files
- usr/
- bin/
- ugene
- lib/
- .build-id/
- 00/
- 2ff755c8a942065448fed060dcb8f7dffb0451
- 01/
- afc0a6f59305667699d98d72f5bfeaf784a693
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- 2cc39a4e52919b383fa8e39cefdb7648a61cd4
- fc/
- 79a57a36b02802868920c5ffa45711cc5c3bdd
- fe/
- 279a069e71724f5a9aecd233711e8e98d99a15
- 00/
- .build-id/
- lib64/
- ugene/
- data
- libQSpec.so
- libU2Algorithm.so
- libU2Core.so
- libU2Designer.so
- libU2Formats.so
- libU2Gui.so
- libU2Lang.so
- libU2Private.so
- libU2Script.so
- libU2Test.so
- libU2View.so
- libbreakpad.so
- plugins/
- CoreTests.license
- CoreTests.plugin
- GUITestBase.license
- GUITestBase.plugin
- annotator.license
- annotator.plugin
- api_tests.license
- api_tests.plugin
- ball.license
- ball.plugin
- biostruct3d_view.license
- biostruct3d_view.plugin
- chroma_view.license
- chroma_view.plugin
- circular_view.license
- circular_view.plugin
- dbi_bam.license
- dbi_bam.plugin
- dna_export.license
- dna_export.plugin
- dna_flexibility.license
- dna_flexibility.plugin
- dna_graphpack.license
- dna_graphpack.plugin
- dna_stat.license
- dna_stat.plugin
- dotplot.license
- dotplot.plugin
- enzymes.license
- enzymes.plugin
- external_tool_support.license
- external_tool_support.plugin
- genecut.license
- genecut.plugin
- genome_aligner.license
- genome_aligner.plugin
- gor4.license
- gor4.plugin
- hmm2.license
- hmm2.plugin
- libCoreTests.so
- libGUITestBase.so
- libannotator.so
- libapi_tests.so
- libball.so
- libbiostruct3d_view.so
- libchroma_view.so
- libcircular_view.so
- libdbi_bam.so
- libdna_export.so
- libdna_flexibility.so
- libdna_graphpack.so
- libdna_stat.so
- libdotplot.so
- libenzymes.so
- libexternal_tool_support.so
- libgenecut.so
- libgenome_aligner.so
- libgor4.so
- libhmm2.so
- liblinkdata_support.so
- liborf_marker.so
- libpcr.so
- libperf_monitor.so
- libphylip.so
- libprimer3.so
- libptools.so
- libquery_designer.so
- libremote_blast.so
- librepeat_finder.so
- libsitecon.so
- libsmith_waterman.so
- libtest_runner.so
- libumuscle.so
- libvariants.so
- libweight_matrix.so
- libworkflow_designer.so
- linkdata_support.license
- linkdata_support.plugin
- orf_marker.license
- orf_marker.plugin
- pcr.license
- pcr.plugin
- perf_monitor.license
- perf_monitor.plugin
- phylip.license
- phylip.plugin
- primer3.license
- primer3.plugin
- ptools.license
- ptools.plugin
- query_designer.license
- query_designer.plugin
- remote_blast.license
- remote_blast.plugin
- repeat_finder.license
- repeat_finder.plugin
- sitecon.license
- sitecon.plugin
- smith_waterman.license
- smith_waterman.plugin
- test_runner.license
- test_runner.plugin
- umuscle.license
- umuscle.plugin
- variants.license
- variants.plugin
- weight_matrix.license
- weight_matrix.plugin
- workflow_designer.license
- workflow_designer.plugin
- plugins_checker
- ugene
- ugenecl
- ugenem
- ugeneui
- ugene/
- share/
- applications/
- ugene.desktop
- icons/
- hicolor/
- 32x32/
- mimetypes/
- application-x-ugene-ext.png
- mimetypes/
- 32x32/
- hicolor/
- licenses/
- ugene/
- LICENSE.3rd_party.txt
- LICENSE.txt
- ugene/
- man/
- man1/
- ugene.1.gz
- man1/
- mime/
- packages/
- application-x-ugene.xml
- packages/
- pixmaps/
- ugene.png
- ugene.xpm
- ugene/
- data/
- DBXRefRegistry.txt
- adapters/
- adapters.fasta
- illumina/
- NexteraPE-PE.fa
- TruSeq2-PE.fa
- TruSeq2-SE.fa
- TruSeq3-PE-2.fa
- TruSeq3-PE.fa
- TruSeq3-SE.fa
- back_translation/
- Bacteria/
- Arthrobacter_aurescens_TC1.cut
- Bacillus_subtilis.cut
- Escherichia_coli.cut
- Haemophilus_influenzae.cut
- Helicobacter_pylori.cut
- Listeria_monocytogenes.cut
- Neisseria_meningitidis.cut
- Salmonella_typhimurium_LT2.cut
- Streptomyces_coelicolor_A3(2).cut
- Sulfolobus_solfataricus_P2.cut
- Invertebrates/
- Apis_mellifera_(honey_bee).cut
- Caenorhabditis_elegans.cut
- Drosophila_melanogaster_(fruit_fly).cut
- Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut
- mitochondrion_Caenorhabditis_elegans.cut
- mitochondrion_Drosophila_melanogaster_(fruit_fly).cut
- Mammalia/
- Bos_taurus_(cow).cut
- Canis_familiaris_(dog).cut
- Sus_scrofa_(pig).cut
- mitochondrion_Bos_taurus_(cow).cut
- mitochondrion_Sus_scrofa_(pig).cut
- Plants/
- Arabidopsis_thaliana_(thale_cress).cut
- Oryza_sativa.cut
- Zea_mays.cut
- Primates/
- Homo_sapiens_(human).cut
- Pan_troglodytes_(chimpanzee).cut
- mitochondrion_Homo_sapiens_(human).cut
- mitochondrion_Pan_troglodytes_(chimpanzee).cut
- Rodents/
- Mus_musculus_(house_mouse).cut
- Rattus_norvegicus_(Norway_rat).cut
- Vertebrates/
- Gallus_gallus_(chicken).cut
- Takifugu_rubripes_(Fugu_rubripes).cut
- Xenopus_laevis_(African_clawed_frog).cut
- mitochondrion_Gallus_gallus_(chicken).cut
- mitochondrion_Takifugu_rubripes_(Fugu_rubripes).cut
- Viruses/
- Human_immunodeficiency_virus_1_(HIV-1).cut
- Influenza_A_virus.cut
- Yeast/
- Saccharomyces_cerevisiae_(baker's_yeast).cut
- tables.xml
- Bacteria/
- biostruct3d_plugin/
- BioStruct3DLinks.txt
- cmdline/
- align-clustalo.uwl
- align-clustalw.uwl
- align-kalign.uwl
- align-mafft.uwl
- align-tcoffee.uwl
- align-to-reference.uwl
- align.uwl
- convert-msa.uwl
- convert-seq.uwl
- extract-sequence.uwl
- extract_consensus_sequence.uwl
- extract_consensus_string.uwl
- extract_coverage.uwl
- fetch-sequence.uwl
- find-orfs.uwl
- find-repeats.uwl
- find-sw.uwl
- gene-by-gene.uwl
- generate-dna.uwl
- hmm2-build.uwl
- hmm2-search.uwl
- hmm3-build-and-search.uwl
- hmm3-search.uwl
- join-quality.uwl
- local-blast.uwl
- pfm-build.uwl
- pfm-search.uwl
- pwm-build.uwl
- pwm-search.uwl
- query.uwl
- remote-request.uwl
- revcompl.uwl
- sitecon-build.uwl
- sitecon-search.uwl
- snp.uwl
- custom_annotations/
- plasmid_features.txt
- enzymes/
- 2023_02_25.bairoch.gz
- genome_lengths/
- danRer7.genome
- ecoli.genome
- hg18.genome
- hg19.genome
- mm10.genome
- mm8.genome
- mm9.genome
- test.genome
- license
- position_weight_matrix/
- JASPAR/
- all_jaspar.csv
- fungi/
- MA0265.1.pfm
- MA0266.1.pfm
- MA0267.1.pfm
- MA0268.1.pfm
- MA0269.1.pfm
- MA0270.1.pfm
- MA0271.1.pfm
- MA0272.1.pfm
- MA0273.1.pfm
- MA0274.1.pfm
- MA0275.1.pfm
- MA0276.1.pfm
- MA0277.1.pfm
- MA0278.1.pfm
- MA0279.1.pfm
- MA0280.1.pfm
- MA0281.1.pfm
- MA0282.1.pfm
- MA0283.1.pfm
- MA0284.1.pfm
- MA0285.1.pfm
- MA0286.1.pfm
- MA0287.1.pfm
- MA0288.1.pfm
- MA0289.1.pfm
- MA0290.1.pfm
- MA0291.1.pfm
- MA0292.1.pfm
- MA0293.1.pfm
- MA0294.1.pfm
- MA0295.1.pfm
- MA0296.1.pfm
- MA0297.1.pfm
- MA0298.1.pfm
- MA0299.1.pfm
- MA0300.1.pfm
- MA0301.1.pfm
- MA0302.1.pfm
- MA0303.1.pfm
- MA0304.1.pfm
- MA0305.1.pfm
- MA0306.1.pfm
- MA0307.1.pfm
- MA0308.1.pfm
- MA0309.1.pfm
- MA0310.1.pfm
- MA0311.1.pfm
- MA0312.1.pfm
- MA0313.1.pfm
- MA0314.1.pfm
- MA0315.1.pfm
- MA0316.1.pfm
- MA0317.1.pfm
- MA0318.1.pfm
- MA0319.1.pfm
- MA0320.1.pfm
- MA0321.1.pfm
- MA0322.1.pfm
- MA0323.1.pfm
- MA0324.1.pfm
- MA0325.1.pfm
- MA0326.1.pfm
- MA0327.1.pfm
- MA0328.1.pfm
- MA0329.1.pfm
- MA0330.1.pfm
- MA0331.1.pfm
- MA0332.1.pfm
- MA0333.1.pfm
- MA0334.1.pfm
- MA0335.1.pfm
- MA0336.1.pfm
- MA0337.1.pfm
- MA0338.1.pfm
- MA0339.1.pfm
- MA0340.1.pfm
- MA0341.1.pfm
- MA0342.1.pfm
- MA0343.1.pfm
- MA0344.1.pfm
- MA0345.1.pfm
- MA0346.1.pfm
- MA0347.1.pfm
- MA0348.1.pfm
- MA0349.1.pfm
- MA0350.1.pfm
- MA0351.1.pfm
- MA0352.1.pfm
- MA0353.1.pfm
- MA0354.1.pfm
- MA0355.1.pfm
- MA0356.1.pfm
- MA0357.1.pfm
- MA0358.1.pfm
- MA0359.1.pfm
- MA0360.1.pfm
- MA0361.1.pfm
- MA0362.1.pfm
- MA0363.1.pfm
- MA0364.1.pfm
- MA0365.1.pfm
- MA0366.1.pfm
- MA0367.1.pfm
- MA0368.1.pfm
- MA0369.1.pfm
- MA0370.1.pfm
- MA0371.1.pfm
- MA0372.1.pfm
- MA0373.1.pfm
- MA0374.1.pfm
- MA0375.1.pfm
- MA0376.1.pfm
- MA0377.1.pfm
- MA0378.1.pfm
- MA0379.1.pfm
- MA0380.1.pfm
- MA0381.1.pfm
- MA0382.1.pfm
- MA0383.1.pfm
- MA0384.1.pfm
- MA0385.1.pfm
- MA0386.1.pfm
- MA0387.1.pfm
- MA0388.1.pfm
- MA0389.1.pfm
- MA0390.1.pfm
- MA0391.1.pfm
- MA0392.1.pfm
- MA0393.1.pfm
- MA0394.1.pfm
- MA0395.1.pfm
- MA0396.1.pfm
- MA0397.1.pfm
- MA0398.1.pfm
- MA0399.1.pfm
- MA0400.1.pfm
- MA0401.1.pfm
- MA0402.1.pfm
- MA0403.1.pfm
- MA0404.1.pfm
- MA0405.1.pfm
- MA0406.1.pfm
- MA0407.1.pfm
- MA0408.1.pfm
- MA0409.1.pfm
- MA0410.1.pfm
- MA0411.1.pfm
- MA0412.1.pfm
- MA0413.1.pfm
- MA0414.1.pfm
- MA0415.1.pfm
- MA0416.1.pfm
- MA0417.1.pfm
- MA0418.1.pfm
- MA0419.1.pfm
- MA0420.1.pfm
- MA0421.1.pfm
- MA0422.1.pfm
- MA0423.1.pfm
- MA0424.1.pfm
- MA0425.1.pfm
- MA0426.1.pfm
- MA0427.1.pfm
- MA0428.1.pfm
- MA0429.1.pfm
- MA0430.1.pfm
- MA0431.1.pfm
- MA0432.1.pfm
- MA0433.1.pfm
- MA0434.1.pfm
- MA0435.1.pfm
- MA0436.1.pfm
- MA0437.1.pfm
- MA0438.1.pfm
- MA0439.1.pfm
- MA0440.1.pfm
- MA0441.1.pfm
- matrix_list.txt
- insects/
- MA0010.1.pfm
- MA0011.1.pfm
- MA0012.1.pfm
- MA0013.1.pfm
- MA0015.1.pfm
- MA0016.1.pfm
- MA0022.1.pfm
- MA0023.1.pfm
- MA0026.1.pfm
- MA00445.1.pfm
- MA0049.1.pfm
- MA0085.1.pfm
- MA0086.1.pfm
- MA0094.2.pfm
- MA0126.1.pfm
- MA0165.1.pfm
- MA0166.1.pfm
- MA0167.1.pfm
- MA0168.1.pfm
- MA0169.1.pfm
- MA0170.1.pfm
- MA0171.1.pfm
- MA0172.1.pfm
- MA0173.1.pfm
- MA0174.1.pfm
- MA0175.1.pfm
- MA0176.1.pfm
- MA0177.1.pfm
- MA0178.1.pfm
- MA0179.1.pfm
- MA0180.1.pfm
- MA0181.1.pfm
- MA0182.1.pfm
- MA0183.1.pfm
- MA0184.1.pfm
- MA0185.1.pfm
- MA0186.1.pfm
- MA0187.1.pfm
- MA0188.1.pfm
- MA0189.1.pfm
- MA0190.1.pfm
- MA0191.1.pfm
- MA0192.1.pfm
- MA0193.1.pfm
- MA0194.1.pfm
- MA0195.1.pfm
- MA0196.1.pfm
- MA0197.1.pfm
- MA0198.1.pfm
- MA0199.1.pfm
- MA0200.1.pfm
- MA0201.1.pfm
- MA0202.1.pfm
- MA0203.1.pfm
- MA0204.1.pfm
- MA0205.1.pfm
- MA0206.1.pfm
- MA0207.1.pfm
- MA0208.1.pfm
- MA0209.1.pfm
- MA0210.1.pfm
- MA0211.1.pfm
- MA0212.1.pfm
- MA0213.1.pfm
- MA0214.1.pfm
- MA0215.1.pfm
- MA0216.1.pfm
- MA0217.1.pfm
- MA0218.1.pfm
- MA0219.1.pfm
- MA0220.1.pfm
- MA0221.1.pfm
- MA0222.1.pfm
- MA0223.1.pfm
- MA0224.1.pfm
- MA0225.1.pfm
- MA0226.1.pfm
- MA0227.1.pfm
- MA0228.1.pfm
- MA0229.1.pfm
- MA0230.1.pfm
- MA0231.1.pfm
- MA0232.1.pfm
- MA0233.1.pfm
- MA0234.1.pfm
- MA0235.1.pfm
- MA0236.1.pfm
- MA0237.1.pfm
- MA0238.1.pfm
- MA0239.1.pfm
- MA0240.1.pfm
- MA0241.1.pfm
- MA0242.1.pfm
- MA0243.1.pfm
- MA0244.1.pfm
- MA0245.1.pfm
- MA0246.1.pfm
- MA0247.1.pfm
- MA0248.1.pfm
- MA0249.1.pfm
- MA0250.1.pfm
- MA0251.1.pfm
- MA0252.1.pfm
- MA0253.1.pfm
- MA0254.1.pfm
- MA0255.1.pfm
- MA0256.1.pfm
- MA0257.1.pfm
- MA0443.1.pfm
- MA0444.1.pfm
- MA0446.1.pfm
- MA0447.1.pfm
- MA0448.1.pfm
- MA0449.1.pfm
- MA0450.1.pfm
- MA0451.1.pfm
- MA0452.1.pfm
- MA0453.1.pfm
- MA0454.1.pfm
- MA0455.1.pfm
- MA0456.1.pfm
- MA0457.1.pfm
- MA0458.1.pfm
- MA0459.1.pfm
- MA0460.1.pfm
- matrix_list.txt
- nematodes/
- MA0260.1.pfm
- MA0261.1.pfm
- MA0262.1.pfm
- MA0263.1.pfm
- MA0264.1.pfm
- matrix_list.txt
- plants/
- MA0001.1.pfm
- MA0005.1.pfm
- MA0008.1.pfm
- MA0020.1.pfm
- MA0021.1.pfm
- MA0034.1.pfm
- MA0044.1.pfm
- MA0045.1.pfm
- MA0053.1.pfm
- MA0054.1.pfm
- MA0064.1.pfm
- MA0082.1.pfm
- MA0096.1.pfm
- MA0097.1.pfm
- MA0110.1.pfm
- MA0120.1.pfm
- MA0121.1.pfm
- MA0123.1.pfm
- MA0127.1.pfm
- MA0128.1.pfm
- MA0129.1.pfm
- matrix_list.txt
- urochordates/
- MA0118.1.pfm
- matrix_list.txt
- vertebrates/
- MA0002.2.pfm
- MA0003.1.pfm
- MA0004.1.pfm
- MA0006.1.pfm
- MA0007.1.pfm
- MA0009.1.pfm
- MA0014.1.pfm
- MA0017.1.pfm
- MA0018.2.pfm
- MA0019.1.pfm
- MA0024.1.pfm
- MA0025.1.pfm
- MA0027.1.pfm
- MA0028.1.pfm
- MA0029.1.pfm
- MA0030.1.pfm
- MA0031.1.pfm
- MA0032.1.pfm
- MA0033.1.pfm
- MA0035.2.pfm
- MA0036.1.pfm
- MA0037.1.pfm
- MA0038.1.pfm
- MA0039.2.pfm
- MA0040.1.pfm
- MA0041.1.pfm
- MA0042.1.pfm
- MA0043.1.pfm
- MA0046.1.pfm
- MA0047.2.pfm
- MA0048.1.pfm
- MA0050.1.pfm
- MA0051.1.pfm
- MA0052.1.pfm
- MA0055.1.pfm
- MA0056.1.pfm
- MA0057.1.pfm
- MA0058.1.pfm
- MA0059.1.pfm
- MA0060.1.pfm
- MA0061.1.pfm
- MA0062.2.pfm
- MA0063.1.pfm
- MA0065.2.pfm
- MA0066.1.pfm
- MA0067.1.pfm
- MA0068.1.pfm
- MA0069.1.pfm
- MA0070.1.pfm
- MA0071.1.pfm
- MA0072.1.pfm
- MA0073.1.pfm
- MA0074.1.pfm
- MA0075.1.pfm
- MA0076.1.pfm
- MA0077.1.pfm
- MA0078.1.pfm
- MA0079.2.pfm
- MA0080.2.pfm
- MA0081.1.pfm
- MA0083.1.pfm
- MA0084.1.pfm
- MA0087.1.pfm
- MA0088.1.pfm
- MA0089.1.pfm
- MA0090.1.pfm
- MA0091.1.pfm
- MA0092.1.pfm
- MA0093.1.pfm
- MA0095.1.pfm
- MA0098.1.pfm
- MA0099.2.pfm
- MA0100.1.pfm
- MA0101.1.pfm
- MA0102.2.pfm
- MA0103.1.pfm
- MA0104.2.pfm
- MA0105.1.pfm
- MA0106.1.pfm
- MA0107.1.pfm
- MA0108.2.pfm
- MA0109.1.pfm
- MA0111.1.pfm
- MA0112.2.pfm
- MA0113.1.pfm
- MA0114.1.pfm
- MA0115.1.pfm
- MA0116.1.pfm
- MA0117.1.pfm
- MA0119.1.pfm
- MA0122.1.pfm
- MA0124.1.pfm
- MA0125.1.pfm
- MA0130.1.pfm
- MA0131.1.pfm
- MA0132.1.pfm
- MA0133.1.pfm
- MA0135.1.pfm
- MA0136.1.pfm
- MA0137.2.pfm
- MA0138.2.pfm
- MA0139.1.pfm
- MA0140.1.pfm
- MA0141.1.pfm
- MA0142.1.pfm
- MA0143.1.pfm
- MA0144.1.pfm
- MA0145.1.pfm
- MA0146.1.pfm
- MA0147.1.pfm
- MA0148.1.pfm
- MA0149.1.pfm
- MA0150.1.pfm
- MA0151.1.pfm
- MA0152.1.pfm
- MA0153.1.pfm
- MA0154.1.pfm
- MA0155.1.pfm
- MA0156.1.pfm
- MA0157.1.pfm
- MA0158.1.pfm
- MA0159.1.pfm
- MA0160.1.pfm
- MA0161.1.pfm
- MA0162.1.pfm
- MA0163.1.pfm
- MA0164.1.pfm
- MA0258.1.pfm
- MA0259.1.pfm
- MA0442.1.pfm
- matrix_list.txt
- UniPROBE/
- Cell08/
- Alx3_3418.2.pwm
- Alx4_1744.1.pwm
- Arx_1738.2.pwm
- Bapx1_2343.1.pwm
- Barhl1_2590.2.pwm
- Barhl2_3868.1.pwm
- Barx1_2877.1.pwm
- Barx2_3447.2.pwm
- Bsx_3483.2.pwm
- Cart1_0997.1.pwm
- Cart1_1275.1.pwm
- Cdx1_2245.1.pwm
- Cdx2_4272.1.pwm
- Cphx_3484.1.pwm
- Crx_3485.1.pwm
- Cutl1_3494.1.pwm
- Cutl1_3494.2.pwm
- Dbx1_3486.1.pwm
- Dbx2_3487.1.pwm
- Dlx1_1741.2.pwm
- Dlx2_2273.2.pwm
- Dlx3_1030.1.pwm
- Dlx4_3488.2.pwm
- Dlx5_3419.2.pwm
- Dmbx1_2277.1.pwm
- Dobox4_3956.2.pwm
- Dobox5_3493.1.pwm
- Duxl_1286.2.pwm
- Emx2_3420.1.pwm
- En1_3123.2.pwm
- En2_0952.1.pwm
- Esx1_3124.2.pwm
- Evx1_3952.2.pwm
- Evx2_2645.3.pwm
- Gbx1_2883.2.pwm
- Gbx2_3110.1.pwm
- Gsc_2327.3.pwm
- Gsh2_3990.2.pwm
- Hdx_3845.3.pwm
- Hlx1_2350.1.pwm
- Hlxb9_3422.1.pwm
- Hmbox1_2674.1.pwm
- Hmx1_3423.1.pwm
- Hmx2_3424.3.pwm
- Hmx3_3490.2.pwm
- Homez_1063.2.pwm
- Hoxa10_2318.1.pwm
- Hoxa11_2218.1.pwm
- Hoxa13_3126.1.pwm
- Hoxa1_3425.1.pwm
- Hoxa2_3079.1.pwm
- Hoxa3_2783.2.pwm
- Hoxa4_3426.1.pwm
- Hoxa5_3415.1.pwm
- Hoxa6_1040.1.pwm
- Hoxa7_2668.2.pwm
- Hoxa7_3750.1.pwm
- Hoxa9_2622.2.pwm
- Hoxb13_3479.1.pwm
- Hoxb3_1720.2.pwm
- Hoxb4_2627.1.pwm
- Hoxb5_3122.2.pwm
- Hoxb6_3428.2.pwm
- Hoxb7_3953.1.pwm
- Hoxb8_3780.2.pwm
- Hoxb9_3413.1.pwm
- Hoxc10_2779.2.pwm
- Hoxc11_3718.2.pwm
- Hoxc12_3480.1.pwm
- Hoxc13_3127.1.pwm
- Hoxc4_3491.1.pwm
- Hoxc5_2630.2.pwm
- Hoxc6_3954.2.pwm
- Hoxc8_3429.2.pwm
- Hoxc9_2367.2.pwm
- Hoxd10_2368.2.pwm
- Hoxd11_3873.1.pwm
- Hoxd12_3481.1.pwm
- Hoxd13_2356.1.pwm
- Hoxd1_3448.1.pwm
- Hoxd3_1742.2.pwm
- Hoxd8_2644.1.pwm
- Ipf1_3815.1.pwm
- Irx2_0900.3.pwm
- Irx3_0920.1.pwm
- Irx3_2226.1.pwm
- Irx4_2242.3.pwm
- Irx5_2385.1.pwm
- Irx6_2623.2.pwm
- Isl2_3430.1.pwm
- Isx_3445.1.pwm
- Lbx2_3869.2.pwm
- Lhx1_2240.2.pwm
- Lhx2_0953.2.pwm
- Lhx3_3431.1.pwm
- Lhx4_1719.2.pwm
- Lhx5_2279.1.pwm
- Lhx6_2272.1.pwm
- Lhx6_3432.1.pwm
- Lhx8_2247.2.pwm
- Lhx9_3492.1.pwm
- Lmx1a_2238.2.pwm
- Lmx1b_3433.2.pwm
- Meis1_2335.1.pwm
- Meox1_2310.2.pwm
- Mrg1_2246.2.pwm
- Mrg2_2302.1.pwm
- Msx1_3031.2.pwm
- Msx2_3449.1.pwm
- Msx3_3206.1.pwm
- Nkx1-1_3856.3.pwm
- Nkx1-2_3214.1.pwm
- Nkx2-2_2823.1.pwm
- Nkx2-3_3435.1.pwm
- Nkx2-4_3074.1.pwm
- Nkx2-5_3436.1.pwm
- Nkx2-6_3437.1.pwm
- Nkx2-9_3082.1.pwm
- Nkx3-1_2923.2.pwm
- Nkx6-1_2825.1.pwm
- Nkx6-1_2825.2.pwm
- Nkx6-3_3446.1.pwm
- Obox1_3970.2.pwm
- Obox2_3438.2.pwm
- Obox3_3439.1.pwm
- Obox5_2284.1.pwm
- Obox5_3963.2.pwm
- Obox6_3440.2.pwm
- Og2x_3719.1.pwm
- Otp_3496.1.pwm
- Otx1_2325.1.pwm
- Otx2_3441.1.pwm
- Pax4_3989.2.pwm
- Pax6_3838.3.pwm
- Pax7_3783.1.pwm
- Pbx1_3203.1.pwm
- Phox2a_3947.1.pwm
- Phox2b_3948.1.pwm
- Pitx1_2312.1.pwm
- Pitx2_2274.3.pwm
- Pitx3_3497.2.pwm
- Pknox1_2364.2.pwm
- Pknox2_3077.2.pwm
- Pou1f1_3818.1.pwm
- Pou2f1_3081.2.pwm
- Pou2f2_3748.1.pwm
- Pou2f3_3986.2.pwm
- Pou3f1_3819.1.pwm
- Pou3f2_2824.1.pwm
- Pou3f3_3235.2.pwm
- Pou3f4_3773.1.pwm
- Pou4f3_2791.1.pwm
- Pou6f1_1731.2.pwm
- Pou6f1_3733.1.pwm
- Prop1_3949.1.pwm
- Prrx1_3442.1.pwm
- Prrx2_3072.1.pwm
- Rax_3443.1.pwm
- Rhox11_1765.2.pwm
- Rhox11_2205.1.pwm
- Rhox6_4251.1.pwm
- Shox2_2641.2.pwm
- Six1_0935.2.pwm
- Six2_2307.2.pwm
- Six3_1732.2.pwm
- Six4_2860.1.pwm
- Six6_2267.4.pwm
- Six6_2267.5.pwm
- Tcf1_2666.2.pwm
- Tcf2_0913.2.pwm
- Tgif1_2342.2.pwm
- Tgif2_3451.1.pwm
- Titf1_1722.2.pwm
- Tlx2_3498.2.pwm
- Uncx4.1_2281.2.pwm
- Vax1_3499.1.pwm
- Vax2_3500.1.pwm
- Vsx1_1728.1.pwm
- GR09/
- Aft1.pwm
- Aro80.pwm
- Asg1.pwm
- Bas1.pwm
- Cbf1.pwm
- Cep3.pwm
- Cha4.pwm
- Cup9.pwm
- Ecm22.pwm
- Fhl1.pwm
- Fkh1.pwm
- Fkh2.pwm
- Gal4.pwm
- Gat1.pwm
- Gat3.pwm
- Gat4.pwm
- Gcn4.pwm
- Gln3.pwm
- Gsm1.pwm
- Gzf3.pwm
- Hal9.pwm
- Leu3.pwm
- Lys14.pwm
- Matalpha2.pwm
- Mbp1.pwm
- Mcm1.pwm
- Met32.pwm
- Mga1.pwm
- Mig1.pwm
- Mig2.pwm
- Mig3.pwm
- Ndt80.pwm
- Nhp6a.pwm
- Nhp6b.pwm
- Nrg1.pwm
- Oaf1.pwm
- Pbf1.pwm
- Pbf2.pwm
- Pdr1.pwm
- Phd1.pwm
- Pho2.pwm
- Pho4.pwm
- Put3.pwm
- Rap1.pwm
- Rdr1.pwm
- Rds1.pwm
- Rds2.pwm
- Rgt1.pwm
- Rph1.pwm
- Rpn4.pwm
- Rsc3.pwm
- Rsc30.pwm
- Rtg3.pwm
- Sfl1.pwm
- Sfp1.pwm
- Sip4.pwm
- Skn7.pwm
- Smp1.pwm
- Spt15.pwm
- Srd1.pwm
- Stb3.pwm
- Stp2.pwm
- Stp4.pwm
- Sum1.pwm
- Sut2.pwm
- Tbf1.pwm
- Tbs1.pwm
- Tea1.pwm
- Tec1.pwm
- Tye7.pwm
- Ume6.pwm
- Usv1.pwm
- Xbp1.pwm
- Yap1.pwm
- Yap6.pwm
- Ybr239c.pwm
- Ydr520c.pwm
- Yer130c.pwm
- Ygr067c.pwm
- Ykl222c.pwm
- Yll054c.pwm
- Yml081w.pwm
- Ynr063w.pwm
- Yox1.pwm
- Ypr013c.pwm
- Ypr015c.pwm
- Ypr196w.pwm
- Yrm1.pwm
- Yrr1.pwm
- NBT06/
- Cbf1.pwm
- Ceh-22.pwm
- Oct-1.pwm
- Rap1.pwm
- Zif268.pwm
- PNAS08/
- Cgd2_3490.pwm
- PF14_0633.pwm
- PFF0200c.pwm
- all_uniprobe.csv
- Cell08/
- JASPAR/
- primer3/
- drosophila.w.transposons.txt
- humrep_and_simple.txt
- rodent_ref.txt
- rodrep_and_simple.txt
- query_samples/
- RepeatsWithORF.uql
- SimpleGene.uql
- samples/
- ABIF/
- A01.abi
- ACE/
- BL060C3.ace
- K26.ace
- APR/
- DNA.apr
- gyrA.apr
- Assembly/
- chrM.fa
- chrM.sam
- chrM.sorted.bam
- CLUSTALW/
- COI.aln
- HIV-1.aln
- ty3.aln.gz
- EMBL/
- AF177870.emb
- AL000263.emb
- FASTA/
- human_T1.fa
- FASTQ/
- eas.fastq
- GFF/
- 5prime_utr_intron_A20.gff
- 5prime_utr_intron_A21.gff
- Genbank/
- CVU55762.gb
- NC_014267.1.gb
- PBR322.gb
- murine.gb
- sars.gb
- HMM/
- aligment15900.hmm
- MMDB/
- 1CRN.prt
- 2JQS.prt
- MSF/
- HMA.msf
- lipid8.msf
- pla2_20.msf
- Newick/
- COI.nwk
- PDB/
- 1CF7.PDB
- 1CRN.PDB
- 3INS.PDB
- Raw/
- raw.seq
- SCF/
- 90-JRI-07.scf
- Sanger/
- alignment.ugenedb
- Stockholm/
- CBS.sto
- UPSK.sto
- Swiss-Prot/
- D0VTW9.txt
- P01375.txt
- P16152.txt
- ABIF/
- sitecon_models/
- eukaryotic/
- CEBP_a.sitecon.gz
- CEBPall.sitecon.gz
- CLOCK.sitecon.gz
- CRE.sitecon.gz
- E2F1.sitecon.gz
- E2F1DP1sel1.sitecon.gz
- EGR1.sitecon.gz
- Eklf.sitecon.gz
- GATA1.sitecon.gz
- GATA_ALL.sitecon.gz
- Gata2.sitecon.gz
- Gata3.sitecon.gz
- HMG1.sitecon.gz
- HNF1.sitecon.gz
- HNF3_4.sitecon.gz
- HNF4.sitecon.gz
- MYOGsel3.sitecon.gz
- MyoD.sitecon.gz
- NF1.sitecon.gz
- NFATp.sitecon.gz
- NFkB_all.sitecon.gz
- NFkB_hetero.sitecon.gz
- NFkB_homo.sitecon.gz
- Nf_e2.sitecon.gz
- Nrf2.sitecon.gz
- Oct1.sitecon.gz
- Oct_all.sitecon.gz
- PPRE.sitecon.gz
- Pu1.sitecon.gz
- SRE_can.sitecon.gz
- STAT.sitecon.gz
- STAT1.sitecon.gz
- TTF1.sitecon.gz
- USF.sitecon.gz
- cMyc_can.sitecon.gz
- er2.sitecon.gz
- irf.sitecon.gz
- isre.sitecon.gz
- nfy.sitecon.gz
- p53.sitecon.gz
- setCREB.sitecon.gz
- setCREBzag.sitecon.gz
- srf_all.sitecon.gz
- yy1.sitecon.gz
- prokaryotic/
- AgaR.sitecon.gz
- AraC.sitecon.gz
- ArcA.sitecon.gz
- ArgR.sitecon.gz
- CpxR.sitecon.gz
- Crp.sitecon.gz
- CysB.sitecon.gz
- CytR.sitecon.gz
- DeoR.sitecon.gz
- DnaA.sitecon.gz
- FUR.sitecon.gz
- FadR.sitecon.gz
- FlhDC.sitecon.gz
- Fnr.sitecon.gz
- Frur.sitecon.gz
- GALR.sitecon.gz
- GALS.sitecon.gz
- GLPR.sitecon.gz
- GNTR.sitecon.gz
- HNS.sitecon.gz
- ICLR.sitecon.gz
- IHF.sitecon.gz
- ISCR1.sitecon.gz
- ISCR3.sitecon.gz
- LEXA.sitecon.gz
- Lrp.sitecon.gz
- MALT.sitecon.gz
- MARA.sitecon.gz
- MELR.sitecon.gz
- MLC.sitecon.gz
- MODE.sitecon.gz
- MetJ.sitecon.gz
- MetR1.sitecon.gz
- NAC.sitecon.gz
- NAGC_new2.sitecon.gz
- NANR.sitecon.gz
- NARL2.sitecon.gz
- NARP.sitecon.gz
- NTRC.sitecon.gz
- NarL.sitecon.gz
- OmpR.sitecon.gz
- OxyR.sitecon.gz
- PHOB.sitecon.gz
- PHOP.sitecon.gz
- PurR.sitecon.gz
- ROB.sitecon.gz
- RcsB_1core.sitecon.gz
- RcsB_2core.sitecon.gz
- Rob2.sitecon.gz
- TORR.sitecon.gz
- TRPR.sitecon.gz
- TyrR.sitecon.gz
- fis_new1.sitecon.gz
- soxS.sitecon.gz
- eukaryotic/
- snp_scripts/
- SNPChIPTools.py
- pdb_uniprot_chain_map.lst.2
- protstability1d.py
- protstability3d.py
- rsnp.py
- snp2pdbsite.py
- update_d_db.py
- translations.txt
- weight_matrix/
- blosum100.txt
- blosum30.txt
- blosum35.txt
- blosum40.txt
- blosum45.txt
- blosum50.txt
- blosum55.txt
- blosum60.txt
- blosum62.txt
- blosum65.txt
- blosum70.txt
- blosum75.txt
- blosum80.txt
- blosum85.txt
- blosum90.txt
- blosumn.txt
- dayhoff.txt
- dna.txt
- gonnet.txt
- identity.txt
- match.txt
- md_10.txt
- md_20.txt
- md_40.txt
- nuc.4.4.txt
- pam10.txt
- pam100.txt
- pam110.txt
- pam120.cdi.txt
- pam120.txt
- pam130.txt
- pam140.txt
- pam150.txt
- pam160.cdi.txt
- pam160.txt
- pam170.txt
- pam180.txt
- pam190.txt
- pam20.txt
- pam200.cdi.txt
- pam200.txt
- pam210.txt
- pam220.txt
- pam230.txt
- pam240.txt
- pam250.cdi.txt
- pam250.txt
- pam260.txt
- pam270.txt
- pam280.txt
- pam290.txt
- pam30.txt
- pam300.txt
- pam310.txt
- pam320.txt
- pam330.txt
- pam340.txt
- pam350.txt
- pam360.txt
- pam370.txt
- pam380.txt
- pam390.txt
- pam40.cdi.txt
- pam40.txt
- pam400.txt
- pam410.txt
- pam420.txt
- pam430.txt
- pam440.txt
- pam450.txt
- pam460.txt
- pam470.txt
- pam480.txt
- pam490.txt
- pam50.txt
- pam500.txt
- pam60.txt
- pam70.txt
- pam80.cdi.txt
- pam80.txt
- pam90.txt
- rna.txt
- vtml160.txt
- vtml200.txt
- workflow_samples/
- Alignment/
- basic_align.uwl
- extract_msa_consensus_as_seq.uwl
- extract_msa_consensus_as_text.uwl
- Conversions/
- faqual2fastq.uwl
- msa2clustal.uwl
- query2alignment.uwl
- seq2gen.uwl
- Custom elements/
- casava-fastq-filter.uwl
- fastq-trimmer.uwl
- script-dump-sequence-info.uwl
- script-linkdata-fetch-seq.uwl
- script-quality-filter.uwl
- Data marking/
- annotation_marker.uwl
- length_marker.uwl
- Data merging/
- find-substrings.uwl
- merge-sequence.uwl
- tfbs.uwl
- HMMER/
- build-test-HMM.uwl
- searchHMM.uwl
- NGS/
- chipseq_coverage.uwl
- consensus.uwl
- extract_coverage.uwl
- extract_transcript_seq.uwl
- fastqc.uwl
- from_tools_menu_only/
- ngs_assembly.uwl
- ngs_assembly_illumina_pe.uwl
- ngs_assembly_illumina_pe_nanopore.uwl
- ngs_assembly_illumina_se.uwl
- ngs_transcriptomics_tophat_stringtie.uwl
- ngs_transcriptomics_tuxedo.uwl
- ngs_variant_annotation.uwl
- ngs_variant_calling.uwl
- ngs_variant_calling_full.uwl
- raw_chip.uwl
- raw_dna.uwl
- raw_ngs/
- chipseq/
- chipseq_paired.uwl
- chipseq_single.uwl
- dnaseq/
- dna_paired.uwl
- dna_single.uwl
- rnaseq/
- rnaseq_filtration_paired.uwl
- rnaseq_filtration_single.uwl
- rnaseq_paired.uwl
- rnaseq_single.uwl
- chipseq/
- raw_rna.uwl
- tuxedo/
- tuxedo_main.uwl
- tuxedo_main_paired.uwl
- tuxedo_no_novel_transcr.uwl
- tuxedo_no_novel_transcr_paired.uwl
- tuxedo_single_dataset.uwl
- tuxedo_single_dataset_paired.uwl
- unmapped_reads.uwl
- Sanger sequencing/
- trim-and-align.uwl
- Scenarios/
- filter_matched.uwl
- find_inverted_repeats.uwl
- find_sequences.uwl
- gene_by_gene_report.uwl
- group_primers_pairs.uwl
- intersect_annotations.uwl
- length_filter.uwl
- merge_sequence_annotation.uwl
- pcr.uwl
- remote_blasting.uwl
- translate_seq_and_compl.uwl
- Transcriptomics/
- SearchTFBS.uwl
- users/
- CASAVA FASTQ filter.usa
- Dump sequence info.usa
- FASTQ Trimmer.usa
- Get the first half of sequence.usa
- Get the second half of sequence.usa
- LengthMarker.usa
- LinkData Fetch.usa
- QualityFilter.usa
- Read one sequence.usa
- Alignment/
- data/
- applications/
- bin/
Sources on Pagure