Fedora Packages


Tools to process short-reads FASTA/FASTQ files

The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information). The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others. However, It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.

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Release Stable Testing
Fedora Rawhide 0.0.14-31.fc38 -
Fedora 38 0.0.14-31.fc38 -
Fedora 37 0.0.14-30.fc37 -
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You can contact the maintainers of this package via email at fastx_toolkit dash maintainers at fedoraproject dot org.

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