bionetgen
Software for rule-based modeling of biochemical systems
BioNetGen is software for the specification and simulation of rule-based models of biochemical systems, including signal transduction, metabolic, and genetic regulatory networks. The BioNetGen language has recently been extended to include explicit representation of compartments. A review of methods for rule-based modeling is available in Science Signaling (Sci. STKE, 18 July 2006, Issue 344, p. re6). BioNetGen is presently a mixture of Perl and C++. Network generation is currently implemented in Perl, the network simulator is C++, and a new language parser is being developed with ANTLR.
Releases Overview
| Release | Stable | Testing |
|---|---|---|
| Fedora Rawhide | 2.9.0-3.fc40 | - |
| Fedora 40 | 2.9.0-3.fc40 | - |
| Fedora 39 | 2.9.0-1.fc39 | - |
| Fedora 38 | 2.8.4-4.fc38 | - |
| EPEL 7 | 2.5.0-5.el7 | - |
Package Info
- Upstream: https://github.com/RuleWorld/bionetgen
- License(s): GPLv3 and BSD and MIT
- Maintainers: zbyszek, sagitter
Related Packages
You can contact the maintainers of this package via email at
bionetgen dash maintainers at fedoraproject dot org.
Sources on Pagure