R-qtl-1.66-1.el9 - Fedora Packages

Date	Author	Change
2023-12-05	Mattias Ellert <mattias dot ellert at physics dot uu dot se> - 1.66-1	- Update to 1.66
2023-11-26	Mattias Ellert <mattias dot ellert at physics dot uu dot se> - 1.62-1	- Update to 1.62
2023-07-23	Mattias Ellert <mattias dot ellert at physics dot uu dot se> - 1.60-3	- Fix build requires
2023-07-19	Fedora Release Engineering <releng at fedoraproject dot org> - 1.60-2	- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
2023-05-16	Mattias Ellert <mattias dot ellert at physics dot uu dot se> - 1.60-1	- Update to 1.60 - Drop workaround for broken openblas on aarch64 in RHEL 8 and 9 Fixed in RHEL 8.8 and 9.2 respectively
2023-04-21	Iñaki Úcar <iucar at fedoraproject dot org> - 1.58-2	- R-maint-sig mass rebuild
2023-01-25	Mattias Ellert <mattias dot ellert at physics dot uu dot se> - 1.58-1	- Update to 1.58 - Workaround broken openblas on aarch64 in RHEL 8 and 9
2023-01-18	Fedora Release Engineering <releng at fedoraproject dot org> - 1.52-4	- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
2022-09-01	Tom Callaway <spot at fedoraprojet dot org> - 1.52-3	- rebuild for R 4.2.1
2022-07-20	Fedora Release Engineering <releng at fedoraproject dot org> - 1.52-2	- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild

usr/
- lib/
  - .build-id/
    - 05/
      - b812c067a6dd839032458083cd631d8e0b68c6
- lib64/
  - R/
    - library/
      - qtl/
        
        BUGS.txt
        
        CITATION
        
        DESCRIPTION
        
        INDEX
        
        INSTALL_ME.txt
        
        MQM-TODO.txt
        
        Meta/
        
        Rd.rds
        
        data.rds
        
        features.rds
        
        hsearch.rds
        
        links.rds
        
        nsInfo.rds
        
        package.rds
        
        vignette.rds
        
        NAMESPACE
        
        NEWS.md
        
        R/
        
        qtl
        
        qtl.rdb
        
        qtl.rdx
        
        data/
        
        badorder.RData
        
        bristle3.RData
        
        bristleX.RData
        
        fake.4way.RData
        
        fake.bc.RData
        
        fake.f2.RData
        
        hyper.RData
        
        listeria.RData
        
        locations.RData
        
        map10.RData
        
        mapthis.RData
        
        multitrait.RData
        
        doc/
        
        Sources/
        
        MQM/
        
        MQM-tour.R
        
        MQM-tour.Rnw
        
        MQM-tour.tex
        
        SweaveIt.R
        
        SweaveIt.Rout
        
        mqm/
        
        advantages_Rd.txt
        
        advantages_latex.txt
        
        description.txt
        
        limitations.txt
        
        parallelisation_references.txt
        
        significance_references.txt
        
        standard_example.txt
        
        standard_references.txt
        
        standard_seealso.txt
        
        sweaveit.bat
        
        sweaveit.sh
        
        geneticmaps.Rnw
        
        new_multiqtl.Rnw
        
        new_summary_scanone.Rnw
        
        new_summary_scantwo.Rnw
        
        rqtltour.tex
        
        rqtltour2.tex
        
        bcsft.R
        
        bcsft.Rnw
        
        bcsft.pdf
        
        geneticmaps.R
        
        geneticmaps.pdf
        
        index.html
        
        new_multiqtl.R
        
        new_multiqtl.pdf
        
        new_summary_scanone.R
        
        new_summary_scanone.pdf
        
        new_summary_scantwo.R
        
        new_summary_scantwo.pdf
        
        rqtltour.R
        
        rqtltour.pdf
        
        rqtltour2.R
        
        rqtltour2.pdf
        
        help/
        
        +2B.scanone.html
        
        +2B.scanoneperm.html
        
        +2B.scantwo.html
        
        +2B.scantwoperm.html
        
        +5B.cross.html
        
        +5B.map.html
        
        +5B.scanoneperm.html
        
        +5B.scantwoperm.html
        
        -.scanone.html
        
        -.scanoneperm.html
        
        -.scantwo.html
        
        -.scantwoperm.html
        
        AnIndex
        
        MQM.html
        
        a.starting.point.html
        
        add.cim.covar.html
        
        add.threshold.html
        
        addcovarint.html
        
        addint.html
        
        addloctocross.html
        
        addmarker.html
        
        addmarkerstointervalmap.html
        
        addpair.html
        
        addqtl.html
        
        addtoqtl.html
        
        aliases.rds
        
        allchrsplits.html
        
        argmax.geno.html
        
        arithscan.html
        
        arithscanperm.html
        
        badorder.html
        
        bayesint.html
        
        bristle3.html
        
        bristleX.html
        
        c.cross.html
        
        c.scanone.html
        
        c.scanoneperm.html
        
        c.scantwo.html
        
        c.scantwoperm.html
        
        calc.errorlod.html
        
        calc.genoprob.html
        
        calc.penalties.html
        
        calc.plod.html
        
        cbind.scanone.html
        
        cbind.scanoneperm.html
        
        cbind.scantwo.html
        
        cbind.scantwoperm.html
        
        checkAlleles.html
        
        checkStepwiseqtlStart.html
        
        checkcovar.html
        
        checkformula.html
        
        chrlen.html
        
        chrnames.html
        
        cim.html
        
        clean.cross.html
        
        clean.html
        
        clean.scantwo.html
        
        cleanGeno.html
        
        comparecrosses.html
        
        comparegeno.html
        
        compareorder.html
        
        condense.html
        
        condense.scantwo.html
        
        convert.html
        
        convert.map.html
        
        convert.scanone.html
        
        convert.scantwo.html
        
        convert2bcsft.html
        
        convert2riself.html
        
        convert2risib.html
        
        convert2sa.html
        
        countXO.html
        
        countqtlterms.html
        
        create.map.html
        
        deparseQTLformula.html
        
        drop.dupmarkers.html
        
        drop.markers.html
        
        drop.nullmarkers.html
        
        dropfromqtl.html
        
        droponemarker.html
        
        effectplot.html
        
        effectscan.html
        
        est.map.html
        
        est.rf.html
        
        fake.4way.html
        
        fake.bc.html
        
        fake.f2.html
        
        fill.geno.html
        
        find.flanking.html
        
        find.marker.html
        
        find.markerindex.html
        
        find.markerpos.html
        
        find.pheno.html
        
        find.pseudomarker.html
        
        find.pseudomarkerpos.html
        
        findDupMarkers.html
        
        find_large_intervals.html
        
        findmarkerindex.html
        
        fitqtl.html
        
        fitqtlengine.html
        
        fitstahl.html
        
        flip.order.html
        
        flipcross.html
        
        formLinkageGroups.html
        
        formMarkerCovar.html
        
        genAllPartitions.html
        
        geno.crosstab.html
        
        geno.image.html
        
        geno.table.html
        
        getgenonames.html
        
        getid.html
        
        getsex.html
        
        groupclusteredheatmap.html
        
        hyper.html
        
        imf.cf.html
        
        imf.h.html
        
        imf.k.html
        
        imf.m.html
        
        imf.stahl.html
        
        inferFounderHap.html
        
        inferredpartitions.html
        
        interpPositions.html
        
        jittermap.html
        
        listeria.html
        
        locateXO.html
        
        locatemarker.html
        
        locations.html
        
        lodint.html
        
        makeqtl.html
        
        map10.html
        
        map2table.html
        
        mapthis.html
        
        markerlrt.html
        
        markernames.html
        
        matchchr.html
        
        max.scanPhyloQTL.html
        
        max.scanone.html
        
        max.scantwo.html
        
        max.scantwocondensed.html
        
        mf.cf.html
        
        mf.h.html
        
        mf.k.html
        
        mf.m.html
        
        mf.stahl.html
        
        movemarker.html
        
        mqm_version.html
        
        mqmaugment.html
        
        mqmautocofactors.html
        
        mqmextractmarkers.html
        
        mqmfind.marker.html
        
        mqmgetmodel.html
        
        mqmpermutation.html
        
        mqmplot.circle.html
        
        mqmplot.cistrans.html
        
        mqmplot.clusteredheatmap.html
        
        mqmplot.cofactors.html
        
        mqmplot.directedqtl.html
        
        mqmplot.heatmap.html
        
        mqmplot.multitrait.html
        
        mqmplot.permutations.html
        
        mqmplot.singletrait.html
        
        mqmplotcircle.html
        
        mqmplotcistrans.html
        
        mqmplotclusteredheatmap.html
        
        mqmplotcofactors.html
        
        mqmplotdirectedqtl.html
        
        mqmplotheatmap.html
        
        mqmplotmultitrait.html
        
        mqmplotpermutations.html
        
        mqmplotsingletrait.html
        
        mqmprocesspermutation.html
        
        mqmscan.html
        
        mqmscanall.html
        
        mqmscanfdr.html
        
        mqmsetcofactors.html
        
        mqmtestnormal.html
        
        multitrait.html
        
        nchr.html
        
        nind.html
        
        nmar.html
        
        nmissing.html
        
        nphe.html
        
        nqrank.html
        
        nqtl.html
        
        ntyped.html
        
        nullmarkers.html
        
        orderMarkers.html
        
        parseformula.html
        
        paths.rds
        
        phenames.html
        
        pickMarkerSubset.html
        
        plot.comparegeno.html
        
        plot.cross.html
        
        plot.errorlod.html
        
        plot.geno.html
        
        plot.info.html
        
        plot.map.html
        
        plot.missing.html
        
        plot.pheno.html
        
        plot.pxg.html
        
        plot.qtl.html
        
        plot.rf.html
        
        plot.rfmatrix.html
        
        plot.scanPhyloQTL.html
        
        plot.scanone.html
        
        plot.scanoneboot.html
        
        plot.scanoneperm.html
        
        plot.scantwo.html
        
        plot.scantwoperm.html
        
        plotErrorlod.html
        
        plotGeno.html
        
        plotInfo.html
        
        plotLodProfile.html
        
        plotMap.html
        
        plotMissing.html
        
        plotModel.html
        
        plotPXG.html
        
        plotPheno.html
        
        plotRF.html
        
        polyplot.html
        
        print.addcovarint.html
        
        print.addint.html
        
        print.compactqtl.html
        
        print.cross.html
        
        print.map.html
        
        print.qtl.html
        
        print.scanoneboot.html
        
        print.scantwo.html
        
        print.summary.addpair.html
        
        print.summary.compactqtl.html
        
        print.summary.comparegeno.html
        
        print.summary.cross.html
        
        print.summary.fitqtl.html
        
        print.summary.map.html
        
        print.summary.qtl.html
        
        print.summary.ripple.html
        
        print.summary.scanone.html
        
        print.summary.scanoneperm.html
        
        print.summary.scantwo.html
        
        print.summary.scantwo.old.html
        
        print.summary.scantwoperm.html
        
        pull.argmaxgeno.html
        
        pull.draws.html
        
        pull.geno.html
        
        pull.genoprob.html
        
        pull.map.html
        
        pull.markers.html
        
        pull.pheno.html
        
        pull.rf.html
        
        qtl-internal.html
        
        qtl-package.html
        
        qtl.rdb
        
        qtl.rdx
        
        qtlversion.html
        
        rbind.scanoneperm.html
        
        rbind.scantwoperm.html
        
        read.cross.html
        
        readMWril.html
        
        reduce2grid.html
        
        refineqtl.html
        
        reorderqtl.html
        
        replace.map.html
        
        replacemap.cross.html
        
        replacemap.html
        
        replacemap.scanone.html
        
        replacemap.scantwo.html
        
        replaceqtl.html
        
        rescalemap.html
        
        reviseXdata.html
        
        reviseqtlnuminformula.html
        
        ripple.html
        
        scanPhyloQTL.html
        
        scanall.html
        
        scanone.html
        
        scanoneboot.html
        
        scanonevar.html
        
        scanonevar.meanperm.html
        
        scanonevar.varperm.html
        
        scanqtl.html
        
        scantwo.html
        
        scantwopermhk.html
        
        shiftmap.html
        
        sim.cross.html
        
        sim.geno.html
        
        sim.map.html
        
        simFounderSnps.html
        
        simPhyloQTL.html
        
        simulateMissingData.html
        
        simulatemissingdata.html
        
        stepwiseqtl.html
        
        strip.partials.html
        
        subrousummaryscantwo.html
        
        subset.cross.html
        
        subset.map.html
        
        subset.scanone.html
        
        subset.scanoneperm.html
        
        subset.scantwo.html
        
        subset.scantwoperm.html
        
        summary.addcovarint.html
        
        summary.addint.html
        
        summary.compactqtl.html
        
        summary.comparegeno.html
        
        summary.cross.html
        
        summary.fitqtl.html
        
        summary.map.html
        
        summary.qtl.html
        
        summary.ripple.html
        
        summary.scanPhyloQTL.html
        
        summary.scanone.html
        
        summary.scanoneboot.html
        
        summary.scanoneperm.html
        
        summary.scantwo.html
        
        summary.scantwo.old.html
        
        summary.scantwocondensed.html
        
        summary.scantwoperm.html
        
        summaryMap.html
        
        summaryScantwoOld.html
        
        switch.order.html
        
        switchAlleles.html
        
        table2map.html
        
        top.errorlod.html
        
        totmar.html
        
        transformPheno.html
        
        tryallpositions.html
        
        typingGap.html
        
        write.cross.html
        
        xaxisloc.scanone.html
        
        html/
        
        00Index.html
        
        MQM.html
        
        R.css
        
        a.starting.point.html
        
        add.cim.covar.html
        
        add.threshold.html
        
        addcovarint.html
        
        addint.html
        
        addloctocross.html
        
        addmarker.html
        
        addpair.html
        
        addqtl.html
        
        addtoqtl.html
        
        allchrsplits.html
        
        argmax.geno.html
        
        arithscan.html
        
        arithscanperm.html
        
        badorder.html
        
        bayesint.html
        
        bristle3.html
        
        bristleX.html
        
        c.cross.html
        
        c.scanone.html
        
        c.scanoneperm.html
        
        c.scantwo.html
        
        c.scantwoperm.html
        
        calc.errorlod.html
        
        calc.genoprob.html
        
        calc.penalties.html
        
        cbind.scanoneperm.html
        
        cbind.scantwoperm.html
        
        checkAlleles.html
        
        chrlen.html
        
        chrnames.html
        
        cim.html
        
        clean.cross.html
        
        clean.scantwo.html
        
        cleanGeno.html
        
        comparecrosses.html
        
        comparegeno.html
        
        compareorder.html
        
        condense.scantwo.html
        
        convert.map.html
        
        convert.scanone.html
        
        convert.scantwo.html
        
        convert2riself.html
        
        convert2risib.html
        
        convert2sa.html
        
        countXO.html
        
        drop.dupmarkers.html
        
        drop.markers.html
        
        drop.nullmarkers.html
        
        dropfromqtl.html
        
        droponemarker.html
        
        effectplot.html
        
        effectscan.html
        
        est.map.html
        
        est.rf.html
        
        fake.4way.html
        
        fake.bc.html
        
        fake.f2.html
        
        fill.geno.html
        
        find.flanking.html
        
        find.marker.html
        
        find.markerpos.html
        
        find.pheno.html
        
        find.pseudomarker.html
        
        findDupMarkers.html
        
        find_large_intervals.html
        
        findmarkerindex.html
        
        fitqtl.html
        
        fitstahl.html
        
        flip.order.html
        
        formLinkageGroups.html
        
        formMarkerCovar.html
        
        geno.crosstab.html
        
        geno.image.html
        
        geno.table.html
        
        getid.html
        
        groupclusteredheatmap.html
        
        hyper.html
        
        inferFounderHap.html
        
        inferredpartitions.html
        
        interpPositions.html
        
        jittermap.html
        
        listeria.html
        
        locateXO.html
        
        locations.html
        
        lodint.html
        
        makeqtl.html
        
        map10.html
        
        map2table.html
        
        mapthis.html
        
        markerlrt.html
        
        markernames.html
        
        max.scanPhyloQTL.html
        
        max.scanone.html
        
        max.scantwo.html
        
        movemarker.html
        
        mqmaugment.html
        
        mqmautocofactors.html
        
        mqmextractmarkers.html
        
        mqmfind.marker.html
        
        mqmgetmodel.html
        
        mqmpermutation.html
        
        mqmplotcircle.html
        
        mqmplotcistrans.html
        
        mqmplotclusteredheatmap.html
        
        mqmplotcofactors.html
        
        mqmplotdirectedqtl.html
        
        mqmplotheatmap.html
        
        mqmplotmultitrait.html
        
        mqmplotpermutations.html
        
        mqmplotsingletrait.html
        
        mqmprocesspermutation.html
        
        mqmscan.html
        
        mqmscanall.html
        
        mqmscanfdr.html
        
        mqmsetcofactors.html
        
        mqmtestnormal.html
        
        multitrait.html
        
        nchr.html
        
        nind.html
        
        nmar.html
        
        nmissing.html
        
        nphe.html
        
        nqrank.html
        
        nqtl.html
        
        ntyped.html
        
        nullmarkers.html
        
        orderMarkers.html
        
        phenames.html
        
        pickMarkerSubset.html
        
        plot.comparegeno.html
        
        plot.cross.html
        
        plot.errorlod.html
        
        plot.geno.html
        
        plot.info.html
        
        plot.map.html
        
        plot.missing.html
        
        plot.pheno.html
        
        plot.pxg.html
        
        plot.qtl.html
        
        plot.rf.html
        
        plot.rfmatrix.html
        
        plot.scanPhyloQTL.html
        
        plot.scanone.html
        
        plot.scanoneboot.html
        
        plot.scanoneperm.html
        
        plot.scantwo.html
        
        plot.scantwoperm.html
        
        plotLodProfile.html
        
        plotModel.html
        
        pull.argmaxgeno.html
        
        pull.draws.html
        
        pull.geno.html
        
        pull.genoprob.html
        
        pull.map.html
        
        pull.markers.html
        
        pull.pheno.html
        
        pull.rf.html
        
        qtl-internal.html
        
        qtlversion.html
        
        read.cross.html
        
        readMWril.html
        
        reduce2grid.html
        
        refineqtl.html
        
        reorderqtl.html
        
        replace.map.html
        
        replacemap.scanone.html
        
        replacemap.scantwo.html
        
        replaceqtl.html
        
        rescalemap.html
        
        ripple.html
        
        scanPhyloQTL.html
        
        scanone.html
        
        scanoneboot.html
        
        scanonevar.html
        
        scanonevar.meanperm.html
        
        scanonevar.varperm.html
        
        scanqtl.html
        
        scantwo.html
        
        scantwopermhk.html
        
        shiftmap.html
        
        sim.cross.html
        
        sim.geno.html
        
        sim.map.html
        
        simFounderSnps.html
        
        simPhyloQTL.html
        
        simulateMissingData.html
        
        stepwiseqtl.html
        
        strip.partials.html
        
        subset.cross.html
        
        subset.map.html
        
        subset.scanone.html
        
        subset.scanoneperm.html
        
        subset.scantwo.html
        
        subset.scantwoperm.html
        
        summary.comparegeno.html
        
        summary.cross.html
        
        summary.fitqtl.html
        
        summary.map.html
        
        summary.qtl.html
        
        summary.ripple.html
        
        summary.scanPhyloQTL.html
        
        summary.scanone.html
        
        summary.scanoneboot.html
        
        summary.scanoneperm.html
        
        summary.scantwo.html
        
        summary.scantwo.old.html
        
        summary.scantwoperm.html
        
        switch.order.html
        
        switchAlleles.html
        
        table2map.html
        
        top.errorlod.html
        
        totmar.html
        
        transformPheno.html
        
        tryallpositions.html
        
        typingGap.html
        
        write.cross.html
        
        xaxisloc.scanone.html
        
        libs/
        
        qtl.so
        
        sampledata/
        
        README.txt
        
        gen.txt
        
        listeria.csv
        
        listeria.qtx
        
        listeria_gen.csv
        
        listeria_gen_rot.csv
        
        listeria_map.txt
        
        listeria_maps.txt
        
        listeria_phe.csv
        
        listeria_phe_rot.csv
        
        listeria_qc_cro.txt
        
        listeria_qc_map.txt
        
        listeria_raw.txt
        
        listeria_rot.csv
        
        map.txt
        
        phe.txt

R-qtl-1.66-1.el9 in EPEL 9

Changelog

Dependencies

Provides

Files