python3-ProDy-2.4.1-10.fc42 in Fedora Rawhide
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Package Info (Data from x86_64 build)
🠗 Changelog
🠗 Dependencies
🠗 Provides
🠗 Files
Changelog
| Date | Author | Change |
|---|---|---|
| 2024-12-25 | Antonio Trande <sagitter at fedoraproject dot org> - 2.4.1-10 | - Force scipy and pyparsing dependencies |
| 2024-12-25 | Sandro <devel at penguinpee dot nl> - 2.4.1-9 | - Backport patch for SciPy >= 1.14 |
| 2024-12-25 | Sandro <devel at penguinpee dot nl> - 2.4.1-8 | - Backport patch for NumPy 2.x |
| 2024-09-16 | Miroslav Suchý <msuchy at fedoraproject dot org> - 2.4.1-7 | - Migrate to SPDX license |
| 2024-09-04 | Miroslav Suchý <msuchy at redhat dot com> - 2.4.1-6 | - convert license to SPDX |
| 2024-07-17 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.1-5 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild |
| 2024-06-08 | Python Maint <python dash maint at redhat dot com> - 2.4.1-4 | - Rebuilt for Python 3.13 |
| 2024-01-22 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.1-3 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild |
| 2024-01-19 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.1-2 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild |
| 2023-08-14 | Antonio Trande <sagitter at fedoraproject dot org> - 2.4.1-1 | - Release 4.2.1 |
Dependencies
Provides
- ProDy
- python-ProDy
- python3-ProDy
- python3-ProDy(x86-64)
- python3.13-ProDy
- python3.13dist(prody)
- python3dist(prody)
Files
- usr/
- bin/
- evol
- evol-3.13
- prody
- prody-3.13
- python3.13-evol
- python3.13-prody
- lib/
- .build-id/
- 08/
- e13809537ebefba01b1020411c0e5727c5397e
- 65/
- ff6c8535c9536530a859ffc4ccdc85f38bd4fb
- 6e/
- cc6019946c73c2affb0cf685e160f32377501f
- 81/
- 6ed57a6e21f9253fba637cfaf5e5ef97b39743
- 84/
- 2683918990e82e63313feb2614708d02e8950f
- c8/
- 882d5463c421175785dc1e2bb0e1f3d505187b
- c9/
- d34fa1a5248591d4f86464e4cd18d568ca1c2b
- 08/
- .build-id/
- lib64/
- python3.13/
- site-packages/
- ProDy-2.4.1.dist-info/
- INSTALLER
- LICENSE.rst
- METADATA
- WHEEL
- entry_points.txt
- top_level.txt
- prody/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- apps/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- apptools.cpython-313.opt-1.pyc
- apptools.cpython-313.pyc
- apptools.py
- evol_apps/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- evol_coevol.cpython-313.opt-1.pyc
- evol_coevol.cpython-313.pyc
- evol_conserv.cpython-313.opt-1.pyc
- evol_conserv.cpython-313.pyc
- evol_fetch.cpython-313.opt-1.pyc
- evol_fetch.cpython-313.pyc
- evol_filter.cpython-313.opt-1.pyc
- evol_filter.cpython-313.pyc
- evol_merge.cpython-313.opt-1.pyc
- evol_merge.cpython-313.pyc
- evol_occupancy.cpython-313.opt-1.pyc
- evol_occupancy.cpython-313.pyc
- evol_rankorder.cpython-313.opt-1.pyc
- evol_rankorder.cpython-313.pyc
- evol_refine.cpython-313.opt-1.pyc
- evol_refine.cpython-313.pyc
- evol_search.cpython-313.opt-1.pyc
- evol_search.cpython-313.pyc
- evol_coevol.py
- evol_conserv.py
- evol_fetch.py
- evol_filter.py
- evol_merge.py
- evol_occupancy.py
- evol_rankorder.py
- evol_refine.py
- evol_search.py
- prody_apps/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- nmaoptions.cpython-313.opt-1.pyc
- nmaoptions.cpython-313.pyc
- prody_align.cpython-313.opt-1.pyc
- prody_align.cpython-313.pyc
- prody_anm.cpython-313.opt-1.pyc
- prody_anm.cpython-313.pyc
- prody_biomol.cpython-313.opt-1.pyc
- prody_biomol.cpython-313.pyc
- prody_blast.cpython-313.opt-1.pyc
- prody_blast.cpython-313.pyc
- prody_catdcd.cpython-313.opt-1.pyc
- prody_catdcd.cpython-313.pyc
- prody_clustenm.cpython-313.opt-1.pyc
- prody_clustenm.cpython-313.pyc
- prody_contacts.cpython-313.opt-1.pyc
- prody_contacts.cpython-313.pyc
- prody_eda.cpython-313.opt-1.pyc
- prody_eda.cpython-313.pyc
- prody_energy.cpython-313.opt-1.pyc
- prody_energy.cpython-313.pyc
- prody_fetch.cpython-313.opt-1.pyc
- prody_fetch.cpython-313.pyc
- prody_gnm.cpython-313.opt-1.pyc
- prody_gnm.cpython-313.pyc
- prody_pca.cpython-313.opt-1.pyc
- prody_pca.cpython-313.pyc
- prody_select.cpython-313.opt-1.pyc
- prody_select.cpython-313.pyc
- nmaoptions.py
- prody_align.py
- prody_anm.py
- prody_biomol.py
- prody_blast.py
- prody_catdcd.py
- prody_clustenm.py
- prody_contacts.py
- prody_eda.py
- prody_energy.py
- prody_fetch.py
- prody_gnm.py
- prody_pca.py
- prody_select.py
- atomic/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- acceptor.cpython-313.opt-1.pyc
- acceptor.cpython-313.pyc
- angle.cpython-313.opt-1.pyc
- angle.cpython-313.pyc
- atom.cpython-313.opt-1.pyc
- atom.cpython-313.pyc
- atomgroup.cpython-313.opt-1.pyc
- atomgroup.cpython-313.pyc
- atomic.cpython-313.opt-1.pyc
- atomic.cpython-313.pyc
- atommap.cpython-313.opt-1.pyc
- atommap.cpython-313.pyc
- bond.cpython-313.opt-1.pyc
- bond.cpython-313.pyc
- chain.cpython-313.opt-1.pyc
- chain.cpython-313.pyc
- crossterm.cpython-313.opt-1.pyc
- crossterm.cpython-313.pyc
- dihedral.cpython-313.opt-1.pyc
- dihedral.cpython-313.pyc
- donor.cpython-313.opt-1.pyc
- donor.cpython-313.pyc
- fields.cpython-313.opt-1.pyc
- fields.cpython-313.pyc
- flags.cpython-313.opt-1.pyc
- flags.cpython-313.pyc
- functions.cpython-313.opt-1.pyc
- functions.cpython-313.pyc
- hierview.cpython-313.opt-1.pyc
- hierview.cpython-313.pyc
- improper.cpython-313.opt-1.pyc
- improper.cpython-313.pyc
- nbexclusion.cpython-313.opt-1.pyc
- nbexclusion.cpython-313.pyc
- pointer.cpython-313.opt-1.pyc
- pointer.cpython-313.pyc
- residue.cpython-313.opt-1.pyc
- residue.cpython-313.pyc
- segment.cpython-313.opt-1.pyc
- segment.cpython-313.pyc
- select.cpython-313.opt-1.pyc
- select.cpython-313.pyc
- selection.cpython-313.opt-1.pyc
- selection.cpython-313.pyc
- subset.cpython-313.opt-1.pyc
- subset.cpython-313.pyc
- acceptor.py
- angle.py
- atom.py
- atomgroup.py
- atomic.py
- atommap.py
- bond.py
- chain.py
- crossterm.py
- dihedral.py
- donor.py
- fields.py
- flags.py
- functions.py
- hierview.py
- improper.py
- nbexclusion.py
- pointer.py
- residue.py
- segment.py
- select.py
- selection.py
- subset.py
- chromatin/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- cluster.cpython-313.opt-1.pyc
- cluster.cpython-313.pyc
- functions.cpython-313.opt-1.pyc
- functions.cpython-313.pyc
- hic.cpython-313.opt-1.pyc
- hic.cpython-313.pyc
- norm.cpython-313.opt-1.pyc
- norm.cpython-313.pyc
- straw.cpython-313.opt-1.pyc
- straw.cpython-313.pyc
- cluster.py
- functions.py
- hic.py
- norm.py
- straw.py
- compounds/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- bird.cpython-313.opt-1.pyc
- bird.cpython-313.pyc
- ccd.cpython-313.opt-1.pyc
- ccd.cpython-313.pyc
- functions.cpython-313.opt-1.pyc
- functions.cpython-313.pyc
- pdbligands.cpython-313.opt-1.pyc
- pdbligands.cpython-313.pyc
- bird.py
- ccd.py
- functions.py
- pdbligands.py
- database/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- cath.cpython-313.opt-1.pyc
- cath.cpython-313.pyc
- dali.cpython-313.opt-1.pyc
- dali.cpython-313.pyc
- goa.cpython-313.opt-1.pyc
- goa.cpython-313.pyc
- pfam.cpython-313.opt-1.pyc
- pfam.cpython-313.pyc
- quartataweb.cpython-313.opt-1.pyc
- quartataweb.cpython-313.pyc
- uniprot.cpython-313.opt-1.pyc
- uniprot.cpython-313.pyc
- cath.py
- dali.py
- goa.py
- pfam.py
- quartataweb.py
- uniprot.py
- domain_decomposition/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- spectrus.cpython-313.opt-1.pyc
- spectrus.cpython-313.pyc
- spectrus.py
- dynamics/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- adaptive.cpython-313.opt-1.pyc
- adaptive.cpython-313.pyc
- analysis.cpython-313.opt-1.pyc
- analysis.cpython-313.pyc
- anm.cpython-313.opt-1.pyc
- anm.cpython-313.pyc
- bbenm.cpython-313.opt-1.pyc
- bbenm.cpython-313.pyc
- bildfile.cpython-313.opt-1.pyc
- bildfile.cpython-313.pyc
- clustenm.cpython-313.opt-1.pyc
- clustenm.cpython-313.pyc
- compare.cpython-313.opt-1.pyc
- compare.cpython-313.pyc
- editing.cpython-313.opt-1.pyc
- editing.cpython-313.pyc
- entropy.cpython-313.opt-1.pyc
- entropy.cpython-313.pyc
- essa.cpython-313.opt-1.pyc
- essa.cpython-313.pyc
- exanm.cpython-313.opt-1.pyc
- exanm.cpython-313.pyc
- exgnm.cpython-313.opt-1.pyc
- exgnm.cpython-313.pyc
- functions.cpython-313.opt-1.pyc
- functions.cpython-313.pyc
- gamma.cpython-313.opt-1.pyc
- gamma.cpython-313.pyc
- gnm.cpython-313.opt-1.pyc
- gnm.cpython-313.pyc
- heatmapper.cpython-313.opt-1.pyc
- heatmapper.cpython-313.pyc
- imanm.cpython-313.opt-1.pyc
- imanm.cpython-313.pyc
- mechstiff.cpython-313.opt-1.pyc
- mechstiff.cpython-313.pyc
- mode.cpython-313.opt-1.pyc
- mode.cpython-313.pyc
- modeset.cpython-313.opt-1.pyc
- modeset.cpython-313.pyc
- nma.cpython-313.opt-1.pyc
- nma.cpython-313.pyc
- nmdfile.cpython-313.opt-1.pyc
- nmdfile.cpython-313.pyc
- pca.cpython-313.opt-1.pyc
- pca.cpython-313.pyc
- perturb.cpython-313.opt-1.pyc
- perturb.cpython-313.pyc
- plotting.cpython-313.opt-1.pyc
- plotting.cpython-313.pyc
- rtb.cpython-313.opt-1.pyc
- rtb.cpython-313.pyc
- sampling.cpython-313.opt-1.pyc
- sampling.cpython-313.pyc
- signature.cpython-313.opt-1.pyc
- signature.cpython-313.pyc
- vmdfile.cpython-313.opt-1.pyc
- vmdfile.cpython-313.pyc
- adaptive.py
- analysis.py
- anm.py
- bbenm.py
- bildfile.py
- clustenm.py
- compare.py
- editing.py
- entropy.py
- essa.py
- exanm.py
- exgnm.py
- functions.py
- gamma.py
- gnm.py
- heatmapper.py
- imanm.py
- mechstiff.py
- mode.py
- modeset.py
- nma.py
- nmdfile.py
- pca.py
- perturb.py
- plotting.py
- rtb.py
- rtbtools.cpython-313-x86_64-linux-gnu.so
- sampling.py
- signature.py
- smtools.cpython-313-x86_64-linux-gnu.so
- vmdfile.py
- ensemble/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- conformation.cpython-313.opt-1.pyc
- conformation.cpython-313.pyc
- ensemble.cpython-313.opt-1.pyc
- ensemble.cpython-313.pyc
- functions.cpython-313.opt-1.pyc
- functions.cpython-313.pyc
- pdbensemble.cpython-313.opt-1.pyc
- pdbensemble.cpython-313.pyc
- conformation.py
- ensemble.py
- functions.py
- pdbensemble.py
- kdtree/
- _CKDTree.cpython-313-x86_64-linux-gnu.so
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- kdtree.cpython-313.opt-1.pyc
- kdtree.cpython-313.pyc
- kdtree.py
- measure/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- contacts.cpython-313.opt-1.pyc
- contacts.cpython-313.pyc
- measure.cpython-313.opt-1.pyc
- measure.cpython-313.pyc
- transform.cpython-313.opt-1.pyc
- transform.cpython-313.pyc
- contacts.py
- measure.py
- transform.py
- proteins/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- blastpdb.cpython-313.opt-1.pyc
- blastpdb.cpython-313.pyc
- ciffile.cpython-313.opt-1.pyc
- ciffile.cpython-313.pyc
- cifheader.cpython-313.opt-1.pyc
- cifheader.cpython-313.pyc
- compare.cpython-313.opt-1.pyc
- compare.cpython-313.pyc
- dssp.cpython-313.opt-1.pyc
- dssp.cpython-313.pyc
- emdfile.cpython-313.opt-1.pyc
- emdfile.cpython-313.pyc
- fixer.cpython-313.opt-1.pyc
- fixer.cpython-313.pyc
- functions.cpython-313.opt-1.pyc
- functions.cpython-313.pyc
- header.cpython-313.opt-1.pyc
- header.cpython-313.pyc
- localpdb.cpython-313.opt-1.pyc
- localpdb.cpython-313.pyc
- pdbclusters.cpython-313.opt-1.pyc
- pdbclusters.cpython-313.pyc
- pdbfile.cpython-313.opt-1.pyc
- pdbfile.cpython-313.pyc
- starfile.cpython-313.opt-1.pyc
- starfile.cpython-313.pyc
- stride.cpython-313.opt-1.pyc
- stride.cpython-313.pyc
- waterbridges.cpython-313.opt-1.pyc
- waterbridges.cpython-313.pyc
- wwpdb.cpython-313.opt-1.pyc
- wwpdb.cpython-313.pyc
- blastpdb.py
- ccealign.cpython-313-x86_64-linux-gnu.so
- ciffile.py
- cifheader.py
- compare.py
- dssp.py
- emdfile.py
- fixer.py
- functions.py
- header.py
- localpdb.py
- pdbclusters.py
- pdbfile.py
- starfile.py
- stride.py
- waterbridges.py
- wwpdb.py
- sequence/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- analysis.cpython-313.opt-1.pyc
- analysis.cpython-313.pyc
- msa.cpython-313.opt-1.pyc
- msa.cpython-313.pyc
- msafile.cpython-313.opt-1.pyc
- msafile.cpython-313.pyc
- plotting.cpython-313.opt-1.pyc
- plotting.cpython-313.pyc
- sequence.cpython-313.opt-1.pyc
- sequence.cpython-313.pyc
- analysis.py
- msa.py
- msafile.py
- msaio.cpython-313-x86_64-linux-gnu.so
- msatools.cpython-313-x86_64-linux-gnu.so
- plotting.py
- seqtools.cpython-313-x86_64-linux-gnu.so
- sequence.py
- tests/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- apps/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- test_prody_anm.cpython-313.opt-1.pyc
- test_prody_anm.cpython-313.pyc
- test_prody_catdcd.cpython-313.opt-1.pyc
- test_prody_catdcd.cpython-313.pyc
- test_prody_examples.cpython-313.opt-1.pyc
- test_prody_examples.cpython-313.pyc
- test_prody_gnm.cpython-313.opt-1.pyc
- test_prody_gnm.cpython-313.pyc
- test_prody_pca.cpython-313.opt-1.pyc
- test_prody_pca.cpython-313.pyc
- test_prody_anm.py
- test_prody_catdcd.py
- test_prody_examples.py
- test_prody_gnm.py
- test_prody_pca.py
- atomic/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- test_atomic.cpython-313.opt-1.pyc
- test_atomic.cpython-313.pyc
- test_atommap.cpython-313.opt-1.pyc
- test_atommap.cpython-313.pyc
- test_fragment.cpython-313.opt-1.pyc
- test_fragment.cpython-313.pyc
- test_hierview.cpython-313.opt-1.pyc
- test_hierview.cpython-313.pyc
- test_select.cpython-313.opt-1.pyc
- test_select.cpython-313.pyc
- test_subset.cpython-313.opt-1.pyc
- test_subset.cpython-313.pyc
- test_atomic.py
- test_atommap.py
- test_fragment.py
- test_hierview.py
- test_select.py
- test_subset.py
- datafiles/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- anm1ubi_evalues.dat
- anm1ubi_hessian.coo
- anm1ubi_vectors.dat
- commute1ubi.dat
- dcd2k39_truncated.dcd
- exanm2nwl_evalues.dat
- exanm2nwl_hessian.coo
- exanm2nwl_vectors.dat
- gnm1ubi_evalues.dat
- gnm1ubi_kirchhoff.coo
- gnm1ubi_vectors.dat
- hit1ubi.dat
- mmcif_6yfy.cif
- mmcif_6zu5.cif
- msa_3hsyA_3o21A.fasta
- msa_Cys_knot.fasta
- msa_Cys_knot.slx
- msa_Cys_knot.sth
- msa_Cys_knot_di.dat
- msa_Cys_knot_sca.dat
- pca2k39_cov.coo
- pca2k39_evalues.dat
- pca2k39_vectors.dat
- pdb1ejg.pdb
- pdb1ejg_oneatom.pdb
- pdb1r19_dssp.pdb
- pdb1tw7_step3_charmm2namd.pdb
- pdb1tw7_step3_charmm2namd_doubled_h36.pdb
- pdb1tw7_step3_charmm2namd_doubled_hex.pdb
- pdb1ubi.pdb
- pdb1ubi_ca.pdb
- pdb2gb1_truncated.pdb
- pdb2k39_ca.pdb
- pdb2k39_truncated.pdb
- pdb2nwl-opm.pdb
- pdb3hsy.pdb
- pdb3mht.pdb
- pdb3o21.pdb
- pdb3p3w.pdb
- pdb4v8r_h36.pdb
- pdb4v8r_hex.pdb
- pdb6fpj_Bb_fixed_solv_ions.pdb
- pdbRTER.pdb
- rtb2gb1_hessian.coo
- rtb2gb1_project.coo
- xmlSTI.xml
- dynamics/
- __init__.py
- __pycache__/
- __init__.cpython-313.opt-1.pyc
- __init__.cpython-313.pyc
- test_editing.cpython-313.opt-1.pyc
- test_editing.cpython-313.pyc
- test_enms.cpython-313.opt-1.pyc
- test_enms.cpython-313.pyc
- test_lda.cpython-313.opt-1.pyc
- test_lda.cpython-313.pyc
- test_pca.cpython-313.opt-1.pyc
- test_pca.cpython-313.pyc
- test_signature.cpython-313.opt-1.pyc
- test_signature.cpython-313.pyc
- test_editing.py
- test_enms.py
- test_lda.py
- test_pca.py
- test_signature.py
- ensemble/
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- site-packages/
- python3.13/
- share/
- doc/
- python3-ProDy/
- README.rst
- python3-ProDy/
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- bin/
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